PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G16920.1
Common NameLOC102717161
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 24885.1 Da    PI: 4.8289
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G16920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.8e-261059251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  rie+   rqvtfskRr g++KKAeEL vLCda+va+++fsstgkl  ++s
  OB06G16920.1 10 RIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFAS 59
                  8*********************************************9986 PP
2K-box50.77.8e-18881711898
         K-box  18 qqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   + e++k  + +e+L     ++R++ Ge+L+ Ls++eLq++e++Le +l+++  +K++ ++e+i elq+k  +l een++Lr+++
  OB06G16920.1  88 NLEHSKCSSLNEQLAeasLQLRQMRGEELDGLSVEELQRMEKNLEAGLQRVLCTKDRQFMEEIGELQQKGIQLAEENMRLRNQM 171
                   556666666666666554899************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.076161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-24323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-29374IPR002100Transcription factor, MADS-box
PfamPF003194.5E-251057IPR002100Transcription factor, MADS-box
CDDcd002651.05E-321375No hitNo description
PRINTSPR004048.6E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.87987177IPR002487Transcription factor, K-box
PfamPF014869.1E-1694171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MARERREIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSS TGKLSQFASS  60
SMNEIIDKYT THSKNLGKPD KQPSIDLNLE HSKCSSLNEQ LAEASLQLRQ MRGEELDGLS  120
VEELQRMEKN LEAGLQRVLC TKDRQFMEEI GELQQKGIQL AEENMRLRNQ MPQVPSAGML  180
AVPDTENVLA EDGQSSESVM TALNSGSSQD NDDGSDISLK LGLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20173173MEF2C
5f28_B4e-20173173MEF2C
5f28_C4e-20173173MEF2C
5f28_D4e-20173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G16920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118590.0AK111859.1 Oryza sativa Japonica Group cDNA clone:J033024G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655913.11e-162PREDICTED: MADS-box transcription factor 55
SwissprotQ69TG51e-138MAD55_ORYSJ; MADS-box transcription factor 55
TrEMBLJ3MCE81e-161J3MCE8_ORYBR; Uncharacterized protein
STRINGOB06G16920.11e-162(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-52MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  3. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  4. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]