PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G18850.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 756aa    MW: 81323.1 Da    PI: 7.5204
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G18850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.81.7e-062643118
      zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
                  CG+H C   CH+GpC++C
  OB06G18850.1 26 CGNHACRDVCHPGPCGEC 43
                  ****************** PP
2zf-NF-X121.26.2e-0784101118
      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                   CG H+C+ +CH G+CppC
  OB06G18850.1  84 CGVHRCKVTCHDGECPPC 101
                   ****************** PP
3zf-NF-X1171.3e-05179197119
      zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                   CG+H Cq lCH G CppC 
  OB06G18850.1 179 CGQHGCQLLCHSGHCPPCL 197
                   ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060083.65E-81659No hitNo description
SMARTSM004387.9E-42645IPR000967Zinc finger, NF-X1-type
PfamPF014228.4E-52643IPR000967Zinc finger, NF-X1-type
CDDcd060089.45E-1474122No hitNo description
SMARTSM004380.001384103IPR000967Zinc finger, NF-X1-type
PfamPF014229.8E-684101IPR000967Zinc finger, NF-X1-type
CDDcd060086.02E-9169221No hitNo description
SMARTSM004387.2E-4179198IPR000967Zinc finger, NF-X1-type
PfamPF014220.0011179196IPR000967Zinc finger, NF-X1-type
SMARTSM004380.49236254IPR000967Zinc finger, NF-X1-type
PfamPF0142290236252IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15289324IPR000967Zinc finger, NF-X1-type
PfamPF014220.0074289304IPR000967Zinc finger, NF-X1-type
PfamPF014223326352IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16333354IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MELKGNLSEK DGVFSCSEAC DHMLACGNHA CRDVCHPGPC GECDLMPGKV TACHCGKTRL  60
LEKRESCLDP IPTCEKVCDK KLPCGVHRCK VTCHDGECPP CVVRVEQRCR CGSSGQMVEC  120
YKVLEEEFHC NKPCGRKKNC GRHRCSECCC PLSKPFAQLE GGNWDPHLCQ IPCGKKLRCG  180
QHGCQLLCHS GHCPPCLETI FNDLTCACGR TSIPPPLPCG TPTPSCPHQC LVPQPCGHPA  240
SHQCHFGDCP PCVVPVMREC IGGHVMLRNI PCGSKDIRCN QPCGKNRQCG IHACTRACHP  300
APCDAPPANG DASSSTGSRA SCGQVCGAAR RECKHTCTAP CHPSSPCPDL RCEFPVTITC  360
SCGHITATVP CGAGGASNGD NMFEISIIQK LPVPLQPVES DGRRVPLGQR KLSCDEDCAK  420
MERKRALAEA FDITPPNLDA LHFGENSNAS DLLSDLFRRE PKWVLAIEER CKFLVLGKTR  480
GNSSGNLKVH VFCHMMKDKR DAIRLIADRW KLSVQAAGWE PKRFITIHVT PKSKPPARIL  540
GSKPGVPVTA SHPFFDPLVD MDPRLVVAML DLPRDADVSA LVLRFGGECE LVWLNDKNAV  600
AVFNDPARAA TALRRLDYGS AYQGAAVFSP SGSAQPGNIW VGGQKDGALA TKSSANPWKK  660
ATASEPDLSS GDWTGVPGHA PPASVWRRGG DTVAQVMGTS NRWNVLESDA ATSSRDEENK  720
PAPRADAGSS AGPSAAPPVS KMQPEIEVDD WEEACE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G18850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055180.0AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693533.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLJ3MCZ10.0J3MCZ1_ORYBR; Uncharacterized protein
STRINGOB06G18850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1