PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G21000.1
Common NameLOC102701555
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 258aa    MW: 27888.6 Da    PI: 6.6786
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G21000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.43.2e-171864147
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                  kri+ +  r v fskRr+g++ KA E+S LC+a+vav+ +s +gk +
  OB06G21000.1 18 KRIKKTDARDVCFSKRRQGLFNKAGEISLLCNADVAVVTLSRDGKGF 64
                  7999****************************************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.5211070IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-201069IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-211281IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-141232IPR002100Transcription factor, MADS-box
PfamPF003193.8E-181966IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-143247IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-144768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVKSNAARAG RKKKIKIKRI KKTDARDVCF SKRRQGLFNK AGEISLLCNA DVAVVTLSRD  60
GKGFSYGHPS VGAIADRLAD MAIVAPSNPS SLGGGDTHDS SDTMQQMKLQ FVEMQNSMES  120
MENKRTTVLE KIENEKVDLM HLLNTQPNVL GIEESKELYD KLSALQSTVR AQIRQKLSDA  180
GVTSSTMPLP DQPPVEMAAG SSQFHFEGQG VTPANTHLPA EISYGLTTDE IFGANDLLIP  240
GVQDGGGFGD CPSSQFGW
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G21000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656924.10.0PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLJ3MDK60.0J3MDK6_ORYBR; Uncharacterized protein
STRINGOB06G21000.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157431316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-15AGAMOUS-like 62