PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G23140.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 90aa    MW: 9876.62 Da    PI: 8.942
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G23140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09449345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   +l+ +a +++ ++   +W  +ar +g g+++ ++k ++ 
     OB06G23140.1  4 SWTKSQNKLFEQALARYDKDtpdRWQNVARAVGGGKSADDVKKHYE 49
                     7*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.9E-8154IPR001005SANT/Myb domain
PROSITE profilePS5129312.122156IPR017884SANT domain
SuperFamilySSF466896.13E-12358IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-4453IPR009057Homeodomain-like
PfamPF002494.9E-7450IPR001005SANT/Myb domain
CDDcd001675.52E-5452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSSWTKSQN KLFEQALARY DKDTPDRWQN VARAVGGGKS ADDVKKHYEE LIKDVDEIES  60
GDHQGSRYRG GGDGGSSSKS KGRGSNGEQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-214721077RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G23140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693803.12e-59PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN05e-27RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLJ3ME708e-58J3ME70_ORYBR; Uncharacterized protein
STRINGOB06G23140.11e-58(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-24RAD-like 6