PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G24450.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 666aa    MW: 74935.3 Da    PI: 6.1682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G24450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-084873126
                  --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                  ++++ C+++ ++G Ck+G +C ++H+
  OB06G24450.1 48 PGEPDCSYYVKFGSCKFGMSCVYNHP 73
                  5789*********************8 PP
2zf-CCCH27.84.4e-0986112127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++ C +++ +G CkyG  CkF+H+p
  OB06G24450.1  86 PGEPDCLHYLMFGRCKYGMDCKFNHPP 112
                   5789*********************96 PP
3zf-CCCH26.31.3e-08155176526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   lC++++  G+Ck G +CkF+H+
  OB06G24450.1 155 LCSYYMNRGICKVGTNCKFHHP 176
                   8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00464774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.34775IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-54973IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-485112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.93985113IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-687112IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-4150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765150178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6154181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-5155179IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6155176IPR000571Zinc finger, CCCH-type
SuperFamilySSF483718.63E-30359537IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.40.1808.5E-30360524IPR016021MIF4G-like domain
SMARTSM005431.7E-18365611IPR003890MIF4G-like, type 3
PfamPF028541.5E-24366524IPR003890MIF4G-like, type 3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MTTTTAASSD EPRRRAPPSS PGERPSTASC QVCRRDDPPE AEEHPRRPGE PDCSYYVKFG  60
SCKFGMSCVY NHPAPPPPSK HHPLRPGEPD CLHYLMFGRC KYGMDCKFNH PPGLTPLQQY  120
FSGRTCQCHH NEGKSEAEHV KLNNLGLPLR PGAGLCSYYM NRGICKVGTN CKFHHPDQEP  180
DHVKLVPSRH DNQVTFQANI YSVLDLEESN ELCEDVKQPA ERICYTRDQL IQLSETVDVP  240
TDHILELIHH INVELGGEDE SRVPNETNHV QIPSYKRFDK IDNRDWRSRS IQTPVVASQD  300
KFWDNIHEGN EAYALGWKQE QSNKHDQLST HSDSKEQVGP TSALSNVEVP WSIRRGNPTE  360
KHGVQETVKG VLNILTPENF DHLKDQLIVA GIARADILED IINLILQKVV AEPNFCPMYA  420
QLFSYINKHL TAFPPDGEQI TFKQALSKKF EEAFEIARTA RADINKMTGP DQEMERRDKE  480
RLLKLQTLGN IRLIRDLLKQ KMVTDKIAYH IVKAVMDSGK FVFEPIENID LLYIIFEGIL  540
GSVSAGTEAD IAVNAIVTSK KCSIIANDVE ITDKGIDRPN EEATLRKSSN EIAENSMDFA  600
HAVCSHLGNE NNKPNNSETS VRISHLGNEN DKSTNSETSV RFNPVGCGIS EIMELVVRCW  660
GSGRDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iul_A4e-1336052217187Eukaryotic translation initiation factor 4 gamma 2
4iul_B4e-1336052217187Eukaryotic translation initiation factor 4 gamma 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G24450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693821.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 43-like
SwissprotQ5Z5Q30.0C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLJ3MEK10.0J3MEK1_ORYBR; Uncharacterized protein
STRINGOB06G24450.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-25zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]