PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G25740.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 347aa    MW: 36407 Da    PI: 7.8087
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G25740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221541.1e-47111562149
        DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslqs 96 
                   g++r ptw+ErEnn+rRERr     a    G  a+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  e+++ +g+sas sp+ss+q 
  OB06G25740.1  11 GGTRVPTWRERENNRRRERRGGG-GA---RGASAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPPpsERPDPIGRSASPSPCSSYQ- 102
                   789***************98765.44...4999*****************************************9999******************. PP

        DUF822  97 slkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvsss 149
                          +sp+ sy++sp+sssfps+ s+++i+la +        +sl+p+l++l+l+ss 
  OB06G25740.1 103 -------PSPRGSYNPSPASSSFPSSGSSSHITLAGNnliggvegSSLIPWLKTLPLSSSY 156
                   .......9*************************999899****999*******99986664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-5711150IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
XXXXGAGGGL GGTRVPTWRE RENNRRRERR GGGGARGASA YGNYNLPKHC DNNEVLKALC  60
NEAGWTVEPD GTTYRKGCKP PPSERPDPIG RSASPSPCSS YQPSPRGSYN PSPASSSFPS  120
SGSSSHITLA GNNLIGGVEG SSLIPWLKTL PLSSSYASSS KFPQLHHLYF NGGSISAPVT  180
PPSSSPTRTP RMRTDWENAS VQPPWASANY TSLPNSTPPS PGHQIAPDPA WLAGFQISSA  240
GPSSPTYNLV SPNPFGVFKE AIASTSRVCT PGQSGTCSPV MGGVPAHHDV QMVDGAPDDF  300
AFGSSSNGKN ESPGLVKAWE GERIHEECAS DELELTLGSS KTRADPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A6e-193784399446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B6e-193784399446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C6e-193784399446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D6e-193784399446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G25740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012290.0AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693609.10.0PREDICTED: LOW QUALITY PROTEIN: protein BZR1 homolog 3-like
SwissprotQ5Z9E50.0BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLJ3MEY00.0J3MEY0_ORYBR; Uncharacterized protein
STRINGOB06G25740.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.19e-66BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]