PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G25840.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 131aa    MW: 13377.2 Da    PI: 9.8463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G25840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-184691251
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++
  OB06G25840.1 46 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAAL 91
                  69****998.**********843...6*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-174692IPR016177DNA-binding domain
SMARTSM003805.0E-2346105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-264691IPR001471AP2/ERF domain
PfamPF008471.5E-124691IPR001471AP2/ERF domain
PROSITE profilePS5103219.1644691IPR001471AP2/ERF domain
CDDcd000183.81E-174781No hitNo description
PRINTSPR003671.4E-104758IPR001471AP2/ERF domain
PRINTSPR003671.4E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MPEYELAACS PASSSASTPP SACGGEKRGR GAGGGGGGRA GGRHPTYRGV RMRAWGKWVS  60
EIREPRKKSR IWLGTFPTPE MAARAHDAAA LVGASGGIAA VLGGDMAGFE MEQVWADGIV  120
ASGFGALLSN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1337103470Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G25840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036822e-70AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149622e-70AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008810659.11e-31ethylene-responsive transcription factor TINY-like
RefseqXP_017429559.11e-31PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-30DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLJ3MEZ05e-87J3MEZ0_ORYBR; Uncharacterized protein
STRINGOB06G25840.19e-88(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]