PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G26400.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 223aa    MW: 24699.9 Da    PI: 9.1984
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G26400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.3e-32351262102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++e++ed++++ ++sw ++ nsfvv+d++ fa ++Lp +Fkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll +i+
  OB06G26400.1  35 FLVKTFEMVEDPATDAVVSWGASRNSFVVWDPHAFAARLLPLHFKHANFSSFLRQLNTYGFRKVSADR---------WEFANEDFLGGQRHLLANIR 122
                   9********************999******************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++ 
  OB06G26400.1 123 RRRA 126
                   *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-5431124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3231124IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-3532124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2835124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-173558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-177385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-178698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDDYTTTVKE EAEVVVLDGE EAPVPLPVGV AVAPFLVKTF EMVEDPATDA VVSWGASRNS  60
FVVWDPHAFA ARLLPLHFKH ANFSSFLRQL NTYGFRKVSA DRWEFANEDF LGGQRHLLAN  120
IRRRRATGTG AASTTTTPRA GTGGGGGGEG EVDRLRRDKE ALARELARLR RQQGEARAHL  180
LDMELRVRGT ERRQEQCTAF LARALRNPDV LDKIARHHAA SLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-232612414129Heat shock factor protein 1
5d5v_B1e-232612414129Heat shock factor protein 1
5d5v_D1e-232612414129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G26400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054561e-120AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149621e-120AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-120CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657062.11e-161PREDICTED: putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-102HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLJ3MF461e-160J3MF46_ORYBR; Uncharacterized protein
STRINGOB06G26400.11e-161(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-50heat shock transcription factor A2