PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB06G28540.1

Common Name

LOC102719397

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 332aa MW: 36215.1 Da PI: 7.4071

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB06G28540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.5e-32	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt LH+rFv+av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYRl OB06G28540.1 47 RQRLRWTDGLHDRFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRL 101 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.946	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-31	46	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-17	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-26	48	102	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-7	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-22	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MYEPKPFSST VPAHNDKVSH NQQIERISNN VASNSGGNSS NSNFATRQRL RWTDGLHDRF 60 VDAVTQLGGP DRATPKGILR IMGVQGLTIY HVKSHLQKYR LAKYIPDPTA DGTKSDKKDL 120 GDLLADIESS SGMEIGEALK LQMEVQKRLH EQLEVQRQLQ LRIEAQGRYL QKIIEEQQRL 180 SSVLGESGKL SAPGPVTGEH YQDSNRTEPS TPVPTSESPI RDKAASGLFK TLSSHDDCLS 240 SGREPLTPDS SCHASSPLES PRGASKRIRV SGGLDHRGND EFALPRKVLE SGSGSDFRQA 300 SSVLSSSTAR FHSLESLNAN ENGFTNVSGS DV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB06G28540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071731	0.0	AK071731.1 Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656238.1	0.0	PREDICTED: protein PHR1-LIKE 1
Swissprot	Q9SJW0	1e-101	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	C0JAD6	0.0	C0JAD6_ORYBR; MYB-CC type transfactor
STRING	OB06G28540.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-75	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	102719397

Publications ? help Back to Top
Lu F, et al. Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proc. Natl. Acad. Sci. U.S.A., 2009. 106(6): p. 2071-6 [PMID:19164767]