PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G30380.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 207aa    MW: 23590.3 Da    PI: 6.7997
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G30380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.16.2e-081441772154
                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  OB06G30380.1 144 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 177
                   569*****************************87 PP
2ELK30.11.1e-1098119122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELKh+L+++Y+++L+++++E++
  OB06G30380.1  98 ELKHELKQGYREKLVDIREEIL 119
                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.9E-13142IPR005541KNOX2
PfamPF037912.4E-12141IPR005541KNOX2
PfamPF037891.7E-698119IPR005539ELK domain
PROSITE profilePS5121310.19698118IPR005539ELK domain
SMARTSM011880.001498119IPR005539ELK domain
PROSITE profilePS5007111.596118181IPR001356Homeobox domain
SuperFamilySSF466894.71E-16120185IPR009057Homeodomain-like
SMARTSM003893.3E-10120185IPR001356Homeobox domain
CDDcd000862.86E-11121182No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24125182IPR009057Homeodomain-like
PfamPF059201.8E-18138177IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WELEQTLQSL TGASPGEGSG ATMSDDEDNQ  60
VDSESNMFDG NDGSDGMGFG PLMLTEGERS LVERVRQELK HELKQGYREK LVDIREEILR  120
KRRAGKLPGD TASTLKAWWQ AHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH  180
SNPASSSSDK SKRKRSNAGD GKAEQSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174194RKRNWHSNPASSSSDKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G30380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414380.0AK241438.1 Oryza sativa Japonica Group cDNA, clone: J065162G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693734.11e-154PREDICTED: homeobox protein knotted-1-like 11 isoform X1
SwissprotQ94LW41e-153KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLA0A0E0HU541e-153A0A0E0HU54_ORYNI; Uncharacterized protein
STRINGOB06G30380.11e-153(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-120KNOTTED1-like homeobox gene 3