PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G31550.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 298aa    MW: 33486.4 Da    PI: 9.1777
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G31550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP97.89.3e-311097178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS..........SEEETTT--SS--S-STTTT-------S--- CS
           SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs..........rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                  +CqvegC  +l   key+r+h+vCe h+k+  v+v+g+ +rfCqqCs          rfh+ sefD+ekrsCrrrL++hn+rrrk+q+
  OB06G31550.1 10 RCQVEGCGLELGGFKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSrdslalpdlrRFHAPSEFDQEKRSCRRRLSDHNARRRKPQT 97
                  6*********************************************955555555555***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114126.077895IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.109.6E-26982IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-319101IPR004333Transcription factor, SBP-box
PfamPF031101.3E-221194IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAVFVWVKAR CQVEGCGLEL GGFKEYYRKH RVCEPHTKCL RVVVAGQDRR FCQQCSRDSL  60
ALPDLRRFHA PSEFDQEKRS CRRRLSDHNA RRRKPQTDVF AFGSGTLRQS VFDDRQQISF  120
TWNKAPFNHA NTTPSSSWTS DLQLSQVMDT SKRSRKSGAD SASIRLSNAF PTLCHDTNQL  180
LPRKGADASE TASKLDGALD VQRALSLLSA SSWGLTDPGH QTSSIIQFTN SNQNTRLPGV  240
PNEGNSNVPF WVDGQPQALE PQVFQFTMDT GNTNTVFPDL ERIKPAYEST LFGVNQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-1811941184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G31550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047441e-109AP004744.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04.
GenBankAP0149621e-109AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-109CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657223.10.0PREDICTED: squamosa promoter-binding-like protein 11
SwissprotQ653Z51e-175SPL11_ORYSJ; Squamosa promoter-binding-like protein 11
TrEMBLJ3MGL10.0J3MGL1_ORYBR; Uncharacterized protein
STRINGOB06G31550.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62712952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.47e-38squamosa promoter binding protein-like 10