PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB06G32040.1

Common Name

LOC102708345

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 255aa MW: 28240.3 Da PI: 6.672

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB06G32040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.6e-31	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH+rFveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ OB06G32040.1 18 PRMRWTEELHRRFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-29	14	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.619	14	74	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.9E-25	18	71	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.36E-16	18	71	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-9	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGGFERRGVR QYNRSDVPRM RWTEELHRRF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS 60 HIKSHLQMYR SGSSNSNHPV SLQKMTSATV SNMNKRELAN REDNCIYASE DRNAASSDKN 120 TYTILRCSRS SIPSIEEIFR NWEQSRGRLL PWNSNVITTE QLAARASRQT TDSKPLKQTG 180 CDLTLSIALC EDAAGSDADG SSTISEEAAA PSRDEAFVSS ADDHFASAAA VARKESDMRT 240 TDLNLDLTIS SSWLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB06G32040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU406763	0.0	CU406763.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656364.1	0.0	PREDICTED: uncharacterized protein LOC102708345
TrEMBL	J3MGR0	0.0	J3MGR0_ORYBR; Uncharacterized protein
STRING	OB06G32040.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-28	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	102708345