 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB06G34390.1 |
| Common Name | LOC102710991 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C3H |
| Protein Properties |
Length: 393aa MW: 42725 Da PI: 8.2972 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB06G34390.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31.6 | 2.8e-10 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+e+Cr+f+r G CkyG++C++ H
OB06G34390.1 5 QEICRNFQR-GSCKYGAQCRYLH 26
79*******.************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MSRRQEICRN FQRGSCKYGA QCRYLHASPH QQQQARPNPF GFGTGSRQQQ PSFGSQFQQQ 60
QQQQQKPNPF GFGVQGANAQ SRNAPGPAKP FQNKWVRDPS APTKQAEAAQ PPQAQAAHTS 120
CEDLQSCRQQ ISEDFKNEAP IWKLTCYAHL RSGPCDIKGD ISFEELRAKA YEEGKQGHSL 180
QSIVEGERNL QNAKLMEFTN LLNSAHPSQT PNFPTMGSFP GVNNNSSFGA SQTNGPPVFS 240
SFSQIGAATN LGPGSGITTP GVPASSPFGQ SSSAPHAAPT FGSSQMKFGV SSAFGNQGLR 300
QPFGTFQSSS NNFPKSSAGY QQSSASSAQH RDIDRQSQEL LSGMMAPTSV MDEASAENIK 360
NENQDDSIWL KEKWAIGEIP LDEPPQRHVS HVF
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK107008 | 0.0 | AK107008.1 Oryza sativa Japonica Group cDNA clone:002-120-E10, full insert sequence. |
