PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G34800.1
Common NameLOC102712738
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 685aa    MW: 77109.1 Da    PI: 8.6609
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G34800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.32.6e-2352150189
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                   +fY++YA ++GF vr++ks++s+r++++++r+fvC++eg++ +++++         + k+rr+r + r gC a+ +v+k++   +w vtk++ +H H
  OB06G34800.1  52 EFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRQHDdltdaeaaaAGKRRRKRLVIREGCMAMCEVTKKEpPLRWAVTKFVAHHVH 148
                   6******************************************99999*******99999********************99*************** PP

          FAR1  88 el 89 
                   ++
  OB06G34800.1 149 PV 150
                   97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-2152150IPR004330FAR1 DNA binding domain
PfamPF105514.5E-25265355IPR018289MULE transposase domain
PROSITE profilePS5096610.509544580IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-6553578IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MEGQSRAEAE GRKEREEGLG LRLGLASAGA PVVAGEPPSV GMEFPTSEAA REFYCAYADR  60
AGFAVRTDKS RRSRRDDSVI MRRFVCTREG FHPTRQHDDL TDAEAAAAGK RRRKRLVIRE  120
GCMAMCEVTK KEPPLRWAVT KFVAHHVHPV SLQVSSRRPP TGPSDALAGA LGESTRAAAE  180
PSDEPTGAPA AVGNGAALFC NRLVRANPAG VRAEVQDVLD YLRKMQAEST GFFYAMQVDS  240
GNCVTNVFWA DAKARMAYKS FGDAVTFDTT YRKTKYMMPF AVFRGINHHL QGITFGCCLL  300
MDETKGSYAW LFDTWLAAMG GRQPDLLVTD QGKAMEAGIA RVLPNTRHCF CQRNILSLCK  360
QKLSVLYTQH INLKADLKEC VFGAETTEEF QARWDYVIDK YSLQENVWLQ SLYDSRQQWA  420
WVYQKGSFFP ELLKSQRSDR LNKFFKTNFN MKTPLLVLIS RFDQVMSLSF EKEAQANSVT  480
AYSKPTLKTP SVIERQAANT YTRAVFDLFQ EEFIESLGYH ADKIEDGVIL KYNVAREGEN  540
GRSYVVSFNQ LDRKAECTCC KFEYAGILCR HVLRIFFMVG VRTLPEGYIL KRWTMDAVTS  600
VVPDERSLEP AGSFPERLVA WHNDLSLDGI IYGMRGAMSP EVYKVAKAAL QKAFDDVVAA  660
KYQQMSEHQD MPLPKLQAKR THTKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G34800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036340.0AP003634.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0655A07.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657329.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3MHI60.0J3MHI6_ORYBR; Uncharacterized protein
STRINGOB06G34800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-136FAR1-related sequence 5