PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G11370.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 133aa MW: 14545.1 Da PI: 4.6837

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G11370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4.2e-11	88	132	1	45
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 e++++r rrk++NRe+ArrsR+R+++++eeLe+ ++eL ae++aL OB07G11370.1 88 EERRRRLRRKISNRESARRSRERRRQRVEELERAADELRAERRAL 132 68899*************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-9	85	132	No hit	No description
Pfam	PF00170	1.6E-7	88	132	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.864	90	133	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.37E-6	92	132	No hit	No description
PROSITE pattern	PS00036	0	95	110	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MLSLHEAMQL DFELQDMDVR FGFGLGFGIE AAVVGSDVTV SDDAAGLPPV VGVVGVRKID 60 DATGGDEGSG GGGGVLLYCD GGGEEDDEER RRRLRRKISN RESARRSRER RRQRVEELER 120 AADELRAERR ALA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G11370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003702	2e-54	AP003702.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1007_H09.
GenBank	AP005309	2e-54	AP005309.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0474G09.
GenBank	AP014963	2e-54	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CU406121	2e-54	CU406121.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M06, full insert sequence.
GenBank	CU406481	2e-54	CU406481.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103G11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	J3MIA5	8e-85	J3MIA5_ORYBR; Uncharacterized protein
STRING	OB07G11370.1	1e-85	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16831	9	9