PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G11590.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 348aa    MW: 37960.8 Da    PI: 6.876
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G11590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.7e-102743092055
                   HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
      Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  OB07G11590.1 274 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 309
                   4679*****************************885 PP
2ELK35.71.8e-12229250122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK qLl+KYsgyL+sL+qEFs
  OB07G11590.1 229 ELKFQLLKKYSGYLSSLRQEFS 250
                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.7E-2387131IPR005540KNOX1
PfamPF037903.4E-2288129IPR005540KNOX1
SMARTSM012561.7E-29134185IPR005541KNOX2
PfamPF037911.1E-23139183IPR005541KNOX2
PfamPF037892.2E-9229250IPR005539ELK domain
PROSITE profilePS5121311.401229249IPR005539ELK domain
SMARTSM011885.7E-7229250IPR005539ELK domain
PROSITE profilePS5007112.892249312IPR001356Homeobox domain
SuperFamilySSF466891.03E-19250324IPR009057Homeodomain-like
SMARTSM003894.4E-13251316IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-28254313IPR009057Homeodomain-like
CDDcd000869.86E-13261313No hitNo description
PfamPF059209.7E-17269308IPR008422Homeobox KN domain
PROSITE patternPS000270287310IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDHGFGSLGG GAAGSGKAAA SSFLQLPLST AAASSMGGGG PAYYGTPLAL HQAAAAAGPS  60
QDHHHHHGGH HKHGGAAGGE ISPAEAEAIK AKIMAHPQYS ALLAAYLDCQ KVGAPPEVLE  120
RLTATAAKLD ARPPGRHDAR DPELDQFMEA YCNMLSKYRE ELTRPIDEAM EFLKRVEAQL  180
DTIAGGGGPS PPPLPHGKSE CVGSSEDDMD PSGRENEPPE IDPRAEDKEL KFQLLKKYSG  240
YLSSLRQEFS KKKKKGKLPK EARQKLLHWW ELHYKWPYPS ETEKIALAES TGLDQKQINN  300
WFINQRKRHW KPSEDMPFVM MEGFHPQSAA ALYMDAPFMA DGMYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G11590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0160710.0AB016071.1 Oryza sativa Japonica Group mRNA, complete cds.
GenBankFJ9402080.0FJ940208.1 Oryza sativa Japonica Group clone KCB937E04 homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646117.10.0homeobox protein knotted-1-like 12
SwissprotO650340.0KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804160.0KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLJ3MIC70.0J3MIC7_ORYBR; Uncharacterized protein
STRINGOB07G11590.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-101KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]