PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G11800.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 354aa    MW: 38986.3 Da    PI: 7.2192
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G11800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.51.7e-131357347
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                  i++++ r +t+skRr+g++K A+ LS+L+da vav +  +++k++
  OB07G11800.1 13 IKENRDRGITLSKRREGLFKLANDLSILTDASVAVCLHDNNNKVQ 57
                  889999*****************************9999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-8462IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-7525IPR002100Transcription factor, MADS-box
CDDcd002663.72E-14583No hitNo description
SuperFamilySSF554551.44E-14775IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.7171063IPR002100Transcription factor, MADS-box
PfamPF003199.4E-131357IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-72540IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-74061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MERRGRRKGV RYIKENRDRG ITLSKRREGL FKLANDLSIL TDASVAVCLH DNNNKVQFFG  60
APMVEPIADA FLSEHPQTKP FVDKQLKAKI ASMQRQLVQL ESEQDEKAKK TEKSIQRFNE  120
VKEQSEGPAK HVFSKVEDLS LDEMRELYQI LLVIQQDVKQ RLPTLRGGNK LQIGGSSASA  180
RQEPSCSRLM ASHHPFTPLL PGGTSRIPMV PPPQALGSPW SHVVPLRSPR FPSAELVPSQ  240
QLPLASLSQN TVPLSTMHAP LAQKPITNQS SAVPLLTQWQ MRFGEQPSSE AQASTLVEQP  300
QQNDSAAPIP TFSDNLLSEL LADVSDDGIA TDAALGSPID ANWFADLDAP NGNI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G11800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037422e-50AP003742.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1118_D07.
GenBankAP0043382e-50AP004338.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0507H12.
GenBankAP0149632e-50AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-50CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694519.10.0PREDICTED: agamous-like MADS-box protein AGL28
TrEMBLJ3MIE80.0J3MIE8_ORYBR; Uncharacterized protein
STRINGOB07G11800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.37e-10AGAMOUS-like 71