PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G12040.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 81aa    MW: 9201.4 Da    PI: 8.3868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G12040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06732226
                  -S---SGGGGTS.--TTTTT-SS-SS CS
       zf-CCCH  2 ktelCrffartG.tCkyGdrCkFaHg 26
                  + +lC+f+++   tC  G+ Ck aHg
  OB07G12040.1  7 RPRLCPFWREENkTCTKGSACKNAHG 32
                  679*******************9998 PP
2zf-CCCH20.77.3e-075071526
                  --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                  +C+ fa +G+C++G++C + Hg
  OB07G12040.1 50 PCKMFAINGWCRFGANCWYDHG 71
                  7********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0044533IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314534IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4732IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5739IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-8839IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5634573IPR000571Zinc finger, CCCH-type
SMARTSM003560.094772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-74976IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-85077IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-45071IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MAEGPPRPRL CPFWREENKT CTKGSACKNA HGDEELRVVP RAEGWQPSGP CKMFAINGWC  60
RFGANCWYDH GNQELRPGRN P
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G12040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MIH22e-53J3MIH2_ORYBR; Uncharacterized protein
STRINGOB07G12040.14e-54(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166371112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-07C3H family protein