PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G12160.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 418aa MW: 46594.9 Da PI: 8.2458

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G12160.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.3	2.9e-18	235	281	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq OB07G12160.1 235 VHNLSERRRRDRINERLKALQELVPHC-----NKTDKASILDEAIEYLKSLQ 281 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.84E-11	227	285	No hit	No description
SuperFamily	SSF47459	1.44E-21	229	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	19.009	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-15	235	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-22	235	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-18	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MEEALAVIKI LLKSLLMDHS ISCLLLKKKL KLLFRSLAWC SPDGELVELL WQDGAVVAHA 60 QQTHQRSSGG VVQAAGSSGV TGEETAAWFP DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXAS SSGGSGSCSL FKRGRDELDS RSEAVGETPP SKRPATKRRT RAAEVHNLSE 240 RRRRDRINER LKALQELVPH CNKTDKASIL DEAIEYLKSL QMQVQIMWMT TGIAPVMLPG 300 AHQLMPPMGM SLNTACMPAA QGLNQLQRAT SYMNNPPPNE MPQIPSPSMN SPSVPNEMQN 360 DNHSRVPRNP FLHRNHTLTA TPQVQGLFPF GSQAAEQNEI QQLLSSTGIP SSSDGTVT

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MEEALAVIKI LLKSLLMDHS ISCLLLKKKL KLLFRSLAWC SPDGELVELL WQDGAVVAHA  60
QQTHQRSSGG VVQAAGSSGV TGEETAAWFP DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXAS SSGGSGSCSL FKRGRDELDS RSEAVGETPP SKRPATKRRT RAAEVHNLSE  240
RRRRDRINER LKALQELVPH CNKTDKASIL DEAIEYLKSL QMQVQIMWMT TGIAPVMLPG  300
AHQLMPPMGM SLNTACMPAA QGLNQLQRAT SYMNNPPPNE MPQIPSPSMN SPSVPNEMQN  360
DNHSRVPRNP FLHRNHTLTA TPQVQGLFPF GSQAAEQNEI QQLLSSTGIP SSSDGTVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	243	KRRTRAAEVHNLSERRRR
2	239	244	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G12160.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015694524.1	1e-149	PREDICTED: transcription factor PIF5-like
Swissprot	Q10CH5	6e-79	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	J3MII4	1e-149	J3MII4_ORYBR; Uncharacterized protein
STRING	OB07G12160.1	1e-150	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.1	3e-25	phytochrome interacting factor 3-like 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]