PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G12490.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 44aa    MW: 5083.76 Da    PI: 12.3021
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G12490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP37.96.1e-121844228
           TCP  2 agkkdrhskihTkvggRdRRvRlsaec 28
                   g+kdrhsk++T++g RdRRvRls+++
  OB07G12490.1 18 SGGKDRHSKVYTAKGIRDRRVRLSVST 44
                  689*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-111943IPR005333Transcription factor, TCP
PROSITE profilePS5136914.8842044IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 44 aa     Download sequence    Send to blast
PWQQQQPASR IYRVSRASGG KDRHSKVYTA KGIRDRRVRL SVST
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G12490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037042e-52AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10.
GenBankAP0061632e-52AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02.
GenBankAP0149632e-52AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-52CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694527.15e-23PREDICTED: LOW QUALITY PROTEIN: transcription factor PCF6
SwissprotA2XMN13e-14PCF6_ORYSI; Transcription factor PCF6
SwissprotQ10CE83e-14PCF6_ORYSJ; Transcription factor PCF6
TrEMBLJ3MIL72e-22J3MIL7_ORYBR; Uncharacterized protein
STRINGOB07G12490.13e-23(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-16TCP family protein