PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G13990.1
Common NameLOC102700538
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 238aa    MW: 25680.3 Da    PI: 9.1191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G13990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-0888132554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h+++Er RR+ri +++  L++l+P+       K + a++L +  +Y+k L
  OB07G13990.1  88 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 132
                   99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1581142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-1081137No hitNo description
PROSITE profilePS5088815.79683132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1485143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-688132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1089138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MASSPSQAST EHTTITDRDG VQLAGLFAPV FGGAGGVQPP HLRAPPPPQV FHGQPKPGEG  60
AMAAPQPQQP PAPRPKVRAR RGQATDPHSI AERLRRERIA ERMRALQDLV PNTNKTDRAA  120
MLDEILDYVK FLRLQVKVLS MSRLGGAGAV AQLVADIPIS VKGEASDSGS KQQIWEKWST  180
DGTEKQVAKL MEEDIGAAMQ FLQSKALCMM PISLAMAIYD TQHSQDGHSV KPEPNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G13990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657507.21e-174PREDICTED: transcription factor UNE12-like
SwissprotO227682e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLJ3MJ171e-173J3MJ17_ORYBR; Uncharacterized protein
STRINGOB07G13990.11e-174(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]