PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G14260.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 205aa    MW: 21786.8 Da    PI: 6.0249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G14260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.3e-0782126755
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                   ++ r RR+ri  +  +L +l+P a      K +s ae+L+ A +++k Lq
  OB07G14260.1  82 AAARERRRRISGKTGQLSRLIPGA-----AKlNSTAEMLQAAARHVKLLQ 126
                   5668899999*************8.....466***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.00475125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-879135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-581131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-681133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-482126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSTATARLSS GLFDRRRCVH DGDGDGDGGT GLLQVQGLAD DVHPDVTDAL LGFVYDPPAD  60
AGLDAFLRPL PRGEVVEAVQ SAAARERRRR ISGKTGQLSR LIPGAAKLNS TAEMLQAAAR  120
HVKLLQAQVG MLALMHSADE PKVPSIAEER MRALLASGGA QERLAGEGVC LVPTKLVHAI  180
ADDKAIRSNP AVERDLSFFM ESLEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G14260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8318084e-66AL831808.4 Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149684e-66AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX2558754e-66BX255875.3 Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126204e-66CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MJ441e-144J3MJ44_ORYBR; Uncharacterized protein
STRINGOB07G14260.11e-144(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-22bHLH family protein