PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G15790.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 230aa    MW: 25408.6 Da    PI: 9.0854
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G15790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM644.4e-2061441128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppG+rF+P+d+elv +yL +++++++l+l+ v+ e+d + + Pw+L  + +++ +e +fF+++d k +       a ++g+W+ + +    +  ++
  OB07G15790.1   6 LPPGVRFDPRDDELVARYLLRRIRKQPLPLDGVVLEADPLGAPPWRLL-ADRGRGDEAFFFAEADAKGKA----PEAHRRGFWQGQQR--VCVG-GK 94 
                   79****************************999**************7.334567899*****9997543....3334569**95544..3333.22 PP

           NAM  98 el.....................vglkktLvfykgrapkgektdWvmheyrl 128
                   +l                          +L f+  + ++g ++ Wvmhey++
  OB07G15790.1  95 RLlvpggggleiawrgssgyvhrRQRVYVLSFF-VEGERG-SSGWVMHEYAV 144
                   224455555667777777775544555678888.445554.79*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-243163IPR003441NAC domain
PROSITE profilePS5100521.9916163IPR003441NAC domain
PfamPF023651.1E-167143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAGNGLPPGV RFDPRDDELV ARYLLRRIRK QPLPLDGVVL EADPLGAPPW RLLADRGRGD  60
EAFFFAEADA KGKAPEAHRR GFWQGQQRVC VGGKRLLVPG GGGLEIAWRG SSGYVHRRQR  120
VYVLSFFVEG ERGSSGWVMH EYAVTSLDEL ASPPLRLYRV RFSGHSKKRK REPECTGAHD  180
DGDQERAASR RAEAESALFQ EVPPPPQPVL PPAAGVSSTD DDGVTGVWRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G15790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.11e-78uncharacterized protein LOC107275325
TrEMBLJ3MJJ71e-163J3MJJ7_ORYBR; Uncharacterized protein
STRINGOB07G15790.11e-164(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.19e-09NAC domain containing protein 57