PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G16480.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 158aa    MW: 17637.5 Da    PI: 10.0772
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G16480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.4e-184377135
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  Cs+C+++kT+ WR+gp g+k+LCnaCG++y++kg+
  OB07G16480.1 43 CSHCQSSKTSIWRNGPLGPKSLCNACGIRYQRKGV 77
                  ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.9E-133577No hitNo description
SMARTSM004011.6E-113789IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.4383778IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-144177IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-124277No hitNo description
PROSITE patternPS0034404368IPR000679Zinc finger, GATA-type
PfamPF003204.6E-164377IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDLSIYIVTT ESGSAQDLVL SPMEPESSLH KVVPLDLNNP RICSHCQSSK TSIWRNGPLG  60
PKSLCNACGI RYQRKGVDAL ELDSKGGKDK KKKTSRNEVL LKSRLKKKNK RVKEVDLGMR  120
MTIEGCQSKL MLTQSQQYED DVKKAAIQLM YLSKAGHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110LKKKNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G16480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695091.13e-96PREDICTED: GATA transcription factor 15-like
TrEMBLJ3MJR61e-112J3MJR6_ORYBR; Uncharacterized protein
STRINGOB07G16480.11e-112(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18253810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-13GATA transcription factor 4