PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G17140.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 248aa    MW: 26215.1 Da    PI: 3.7147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G17140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM552.8e-171298186
           NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86
                  lppG+ F+P+d+ lv  yL ++++g++ l+l+ +i e+d +++ Pw+L + + ++ +e +fF+ ++ k+ +gkr++r +   g+W+ +
  OB07G17140.1 12 LPPGLTFQPRDDVLVGSYLLRRIQGTRpLPLQGAILEADPLSAPPWELLAGF-GRGDEAFFFADARAKNGKGKRQKRtVEGGGFWQGQ 98
                  79**********************9987899889**************8554.45789*******************555599**965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-189102IPR003441NAC domain
PROSITE profilePS5100515.90612174IPR003441NAC domain
PfamPF023653.4E-81399IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAPGGAVAED ALPPGLTFQP RDDVLVGSYL LRRIQGTRPL PLQGAILEAD PLSAPPWELL  60
AGFGRGDEAF FFADARAKNG KGKRQKRTVE GGGFWQGQRA CVDGEKLLVP GGDGVAELPD  120
LIALPSEEAD PQPLLPPAPA ALVRFADDAA GASNDSSMVS TQPPELTVLP LPAEEADAAP  180
APSGISWPDD QSDYSSSIID GEALMWSDYD FPENIDEVLS CIDFTATADQ CSSLDFCLDN  240
LFDDLQAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G17140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MJY21e-174J3MJY2_ORYBR; Uncharacterized protein
STRINGOB07G17140.11e-175(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.23e-10NAC domain containing protein 50