PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G17770.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 88aa    MW: 10212.9 Da    PI: 10.1818
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G17770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-103064338
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                     +WT+eEd ll ++ k+   ++W++Iar m+  R++ 
     OB07G17770.1 30 AWTPEEDALLQRLAKENRFRRWSRIARSMP-LRSAR 64
                     7*****************************.99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00472776IPR001005SANT/Myb domain
PfamPF002498.3E-93064IPR001005SANT/Myb domain
CDDcd001673.54E-93063No hitNo description
Gene3DG3DSA:1.10.10.608.8E-103068IPR009057Homeodomain-like
SuperFamilySSF466895.61E-93079IPR009057Homeodomain-like
PROSITE profilePS500907.3873174IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MDPEVNMVSS PPAPTVPRPR FVVRLKLPPA WTPEEDALLQ RLAKENRFRR WSRIARSMPL  60
RSARICLDGY RIVTDGCYNS NVFYFVCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G17770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052003e-46AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149633e-46AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126153e-46CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.16e-22transcription factor MYB73
TrEMBLJ3MK451e-57J3MK45_ORYBR; Uncharacterized protein
STRINGOB07G17770.12e-58(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-09myb domain protein 73