PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G18110.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 99aa    MW: 9993.83 Da    PI: 7.6714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G18110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-051537123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C+ C++ F++   L  H++ H
  OB07G18110.1 15 YECTFCKRGFTNAQALGGHMNIH 37
                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.32E-71441No hitNo description
PfamPF139128.9E-61439IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2611542IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-51541IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00971537IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MDGEGARRAP AAAYYECTFC KRGFTNAQAL GGHMNIHRKD RGAGGKSQGG GGGQQHEGSG  60
GGGGGGGGAG DVHLGLTLGR NEDGVDLELR LGHGHYPYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14351GGKSQGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G18110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043362e-54AP004336.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0498D08, complete sequence.
GenBankAP0051682e-54AP005168.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06.
GenBankAP0149632e-54AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-54CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669637.12e-34zinc finger protein JAGGED-like
TrEMBLJ3MK795e-62J3MK79_ORYBR; Uncharacterized protein
STRINGOB07G18110.18e-63(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-15C2H2 family protein