PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G18270.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 115aa MW: 13065.9 Da PI: 10.8472

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G18270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.6e-09	31	64	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +WT+eEd ll ++ k+ ++W++Iar m R++ OB07G18270.1 31 PWTPEEDALLQRLAKENRFRRWSRIARSMR-LRSA 64 7****************************9.8886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.4E-7	22	64	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	24	66	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.9E-8	28	64	IPR009057	Homeodomain-like
CDD	cd00167	5.71E-8	31	64	No hit	No description
Pfam	PF00249	1.5E-7	31	64	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MDPEVNMASS PPAPAVPRSR FIVRLKLPPA PWTPEEDALL QRLAKENRFR RWSRIARSMR 60 LRSARKEKPA GAEDADNDMV EIDKESWVEP ESQGRLGLAN ALARPDDGRQ PRARL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G18270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645964.1	3e-16	transcription factor MYB73
TrEMBL	J3MK95	7e-74	J3MK95_ORYBR; Uncharacterized protein
STRING	OB07G18270.1	1e-74	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12569	20	35