PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G18450.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 64aa    MW: 7881.05 Da    PI: 12.0783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G18450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.9e-081354347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++T+ +d+ l++++++lG + Wk I r  g  Rt    + rw  +
     OB07G18450.1 13 PFTARDDDELLRLHRRLGDR-WKEIGRVYG--RTSRIMRRRWKEL 54
                     89****************99.********8..8988889988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.95E-8156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-9354IPR009057Homeodomain-like
PROSITE profilePS5129410.945659IPR017930Myb domain
SMARTSM007171.4E-41057IPR001005SANT/Myb domain
PfamPF139211.5E-71456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
WPHHLARDLY HRPFTARDDD ELLRLHRRLG DRWKEIGRVY GRTSRIMRRR WKELRRSGFV  60
AAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G18450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0927492e-46AC092749.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0023M11, from chromosome 10, complete sequence.
GenBankAC1235942e-46AC123594.1 Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13, complete sequence.
GenBankAP0149662e-46AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664837.15e-31PREDICTED: myb-related protein 315-like
TrEMBLJ3MKB32e-37J3MKB3_ORYBR; Uncharacterized protein
STRINGOB07G18450.14e-38(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035