PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G18460.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 174aa    MW: 19521.6 Da    PI: 7.1955
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G18460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.6e-153172345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +WT+eEd ll ++ k+ G ++W++Iar m+ +R++ +c+ rw 
     OB07G18460.1 31 AWTPEEDALLQRLAKENGFRRWSRIARSMP-RRSARSCRARWX 72
                     7*****************************.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9462479IPR017930Myb domain
SMARTSM007175.0E-112877IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-122972IPR009057Homeodomain-like
PfamPF002497.1E-143172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-143172IPR009057Homeodomain-like
CDDcd001674.44E-83160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDQDGDQVVM ASSPPPVARA RCIARLRLPP AWTPEEDALL QRLAKENGFR RWSRIARSMP  60
RRSARSCRAR WXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXRELH  120
RSGFAAAAAA SKEQPADDAD NNMAEGDEES QDTLGFANAL ASSLASCSLR EDSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G18460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052004e-53AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149634e-53AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126154e-53CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MKB43e-65J3MKB4_ORYBR; Uncharacterized protein
STRINGOB07G18460.14e-66(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035