PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G18470.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 115aa    MW: 13332.3 Da    PI: 11.4074
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G18470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.6e-122867343
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                     +WT+eEd +l ++ k+   ++W++Iar m+ +R++ +c+ r
     OB07G18470.1 28 AWTPEEDAQLQRLAKENAFRRWSRIARSMP-RRSARSCRAR 67
                     7*****************************.********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.4E-72574IPR001005SANT/Myb domain
PROSITE profilePS5129411.4042776IPR017930Myb domain
SuperFamilySSF466896.79E-1627106IPR009057Homeodomain-like
CDDcd001674.55E-62857No hitNo description
PfamPF002496.2E-112869IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-1429106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MHQEEMTTPP PLPAPRPRCI VRLRLPPAWT PEEDAQLQRL AKENAFRRWS RIARSMPRRS  60
ARSCRARPHN LARDAYHRPI TAHDDDELLR LHCRLGDRWK EIGRAVYGSA APPAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G18470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052001e-83AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149631e-83AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.18e-51transcription factor MYB73
TrEMBLJ3MKB52e-76J3MKB5_ORYBR; Uncharacterized protein
STRINGOB07G18470.13e-77(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-08myb domain protein r1