PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G23640.1
Common NameLOC102717538
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 571aa    MW: 64456.1 Da    PI: 6.3149
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G23640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.43.8e-1292025702373
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL++cAea+s++ + + ++l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s+e l+++k++++++P++kf++++a
  OB07G23640.1 202 KQLLTRCAEALSEDRTDEFHKLVQEARGVVSITGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPD---SKELLSYMKILYNICPYFKFGYMAA 295
                   689*****************************************************************9...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   N aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  +   l  +g+ L+++ ee+++p+ef++l   + ++++ e+
  OB07G23640.1 296 NGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGAGLDIVGKLLKSMSEEFNIPLEFTPL-PVTATQVTKEM 391
                   ****************************************************99999999************************5.88899999*** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf e+++yysa+f+s++a+lpr+++eri+vE+++l
  OB07G23640.1 392 LDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMDYYSAMFESIDANLPRDNKERISVEQHCL 488
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   +++ivn+vaceg++r+erhe l+kW++rl++aGF+p+pls+++++ ++ ll+ ++ d y++ee++g+++lgWk+r+L+s+SaW
  OB07G23640.1 489 AKDIVNIVACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLLACYS-DKYTLEEKDGAMLLGWKNRKLISASAW 570
                   ***************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.267175552IPR005202Transcription factor GRAS
PfamPF035141.3E-126202570IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDLHQLFKYR LSGANIVYEI PTENNLQNSP WQANPLKYEF SDSPYTPLSS QFECDNLSAL  60
TNTPDNQSST ETISAQPISP LEADSSYRQA GILLRENIQV GADPLYCTSR HNMQHALREI  120
ETVLMAPDTD DATTSTKHEF EEIKPAQLVR QRSRTWSHES RHPLPGVGRP QFSSGGYPTA  180
SYEFRPEKRQ RELREDPQII VKQLLTRCAE ALSEDRTDEF HKLVQEARGV VSITGEPIQR  240
LGAYLLEGLV ARHGNSGTNI YRALKCREPD SKELLSYMKI LYNICPYFKF GYMAANGAIA  300
EALRTENNIH IIDFQIAQGT QWITLIQALA ARPGGPPHVR ITGIDDPVSE YARGAGLDIV  360
GKLLKSMSEE FNIPLEFTPL PVTATQVTKE MLDIRPGEAL AVNFTLQLHH TPDESVDVNN  420
PRDGLLRMVK GLSPKVTTLV EQESHTNTTP FLMRFGETMD YYSAMFESID ANLPRDNKER  480
ISVEQHCLAK DIVNIVACEG KDRVERHELL GKWKSRLTMA GFRPYPLSSY VNSVIRKLLA  540
CYSDKYTLEE KDGAMLLGWK NRKLISASAW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-691855703378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G23640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042350.0AP004235.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0006G05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657807.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLJ3MLT20.0J3MLT2_ORYBR; Uncharacterized protein
STRINGOB07G23640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]