PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G24770.1
Common NameLOC102705734
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 437aa    MW: 46543.9 Da    PI: 7.2117
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G24770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.65.9e-54291571128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++  
  OB07G24770.1  29 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEVDLYKFDPWELPEKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASgs 124
                   79****************************.89***************999999****************************************977 PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
  OB07G24770.1 125 SREKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 157
                   7788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6325203IPR003441NAC domain
PROSITE profilePS5100561.33129203IPR003441NAC domain
PfamPF023651.2E-2730157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MESPDSSSGS APPRALRRQQ QPGGSAPELP PGFRFHPTDE ELVVHYLKKK AASVPLPVTI  60
IAEVDLYKFD PWELPEKASF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPIM  120
ASGSSREKVG VKKALVFYRG KPPKGIKTNW IMHEYRLTDT TSSSLTAAGV ATTRRPPPTI  180
TGGSRGAVSL RLDDWVLCRI YKKTNKAGAG QRSMECEDSI EDAVTAYAPS QPHATAVGMA  240
GPGGGAGGAA AHGGGDYSSL LHHHHDSHED NFLINGLLTA EDAAGLSTGA SCSLSQLAAA  300
ARATATATTC DTTRQLLAPS PTPFNWFEAF LPRGKEFPGG PNRASARDIG DMSLSSSTAD  360
RNQLQAEEVA VDIDTGDATH GANAMPAFIN PLTVQGATYQ QHHAIMGATL PSESSVAAAA  420
ACNFQHPYQL SRVNWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-72182064171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G24770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634060.0AK063406.1 Oryza sativa Japonica Group cDNA clone:001-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657850.10.0PREDICTED: NAC transcription factor ONAC010
SwissprotA2YMR00.0NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLJ3MM450.0J3MM45_ORYBR; Uncharacterized protein
STRINGOB07G24770.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.14e-87NAC domain containing protein 25