PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G24850.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 51aa    MW: 5634.12 Da    PI: 4.193
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G24850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS26.19.6e-09232344374
          GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ++++gy++ ee+g+l lgWkd +L+++S+W+
  OB07G24850.1   2 YPWKGYTLVEEDGCLKLGWKDLSLLTASSWE 32 
                   6699**************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.3E-6232IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
MYPWKGYTLV EEDGCLKLGW KDLSLLTASS WEPTDADATA AGDAHHEDHN S
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G24850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590083e-42AK059008.1 Oryza sativa Japonica Group cDNA clone:001-020-H08, full insert sequence.
GenBankAK0612423e-42AK061242.1 Oryza sativa Japonica Group cDNA clone:006-211-D01, full insert sequence.
GenBankAP0038663e-42AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149633e-42AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126153e-42CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644982.14e-23scarecrow-like protein 23
TrEMBLJ3MM535e-29J3MM53_ORYBR; Uncharacterized protein
STRINGOB07G24850.18e-30(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5242622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.13e-14GRAS family protein