PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G24910.1
Common NameLOC102707506
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 670aa    MW: 71260.3 Da    PI: 6.9699
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G24910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.7e-08276298426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   ++C++f+r G C+ Gd+C F+Hg
  OB07G24910.1 276 VPCPNFRRPGGCPSGDSCEFSHG 298
                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.37E-1366145IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.7E-1566146IPR020683Ankyrin repeat-containing domain
SMARTSM002485.76797IPR002110Ankyrin repeat
PROSITE profilePS5029715.48667142IPR020683Ankyrin repeat-containing domain
PfamPF127965.0E-867134IPR020683Ankyrin repeat-containing domain
CDDcd002046.55E-1269145No hitNo description
SMARTSM002480.0044102134IPR002110Ankyrin repeat
PROSITE profilePS5008811.942102137IPR002110Ankyrin repeat
PROSITE profilePS5010313.995272300IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4272299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5273301IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-6276299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4304337IPR000571Zinc finger, CCCH-type
SMARTSM0035621308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MGELADLVAV PQPPLAGGRR DRLAALLELA AADDVDGMKG ALMEGGEEAT EVADGVGLWY  60
GRSKAYEPRT PLMVAATYGS AGVVSLLVGL GCVDVNRRPG VDGATALHCA ASGGSRNAVA  120
VVKLLLAAGA DPATPDCAGR FPADVILAPP ASPDALGDLE VLLGRRRPLA VATSVASGSS  180
SPPLSSSPDE GNRSPSSRSS SLSPITVDRG KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DSCEFSHGVF  300
ESWLHPSQYR TRLCKEGAAC ARRICFFAHD EDELRHVPHN GGTGLLSPRA SSSIDMTAAA  360
ALGLLPGSPT RHFAPPPVSP SAGSNGGAAA PHWLQGSRLR SSFNARDAAV DDLGMLLEWE  420
SQYLGALCLP PSSRPQPRLS TGLSIRPTIA PSNLEDMYAS DIAMSPRFPN DQGHSVYSPA  480
HKSALLNKLH QQKGLLSPVN TNRMYSPRAI DPSSLVHSPF GGMSPRSPRT MEPTSPLSAR  540
VGATATQRDM FEQFPSLNKH QLPSVGSPRN SSTSWGTVGS PMGKVDWGVD SEELVRLRRP  600
AQPGLGEEDS DISWMQPLVS PADLNGKRGE IQGMPGASAL MNRPELNNQG DLLDQTVIGA  660
WLEQMHLDQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A5e-1123833114118RING finger protein unkempt homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G24910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657856.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
RefseqXP_015695270.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLJ3MM590.0J3MM59_ORYBR; Uncharacterized protein
STRINGOB07G24910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-131CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]