PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G25220.1
Common NameLOC102710316
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 164aa    MW: 17773.2 Da    PI: 7.2191
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G25220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY136.33.6e-42121627169
         YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103
                    e++ yvqCn C+t+l+vsvP + +++vv+v+CGhC+ +ls  ++     l+          ++   e + +e +++    +++ +s+    e    
  OB07G25220.1  12 RERLGYVQCNLCDTVLLVSVPCSRVLRVVAVQCGHCSGILS-AVSLPPPPLP----------PPASVEIRPQELDVEPPPREYSDESSGDDREG--G 95 
                   6899*************************************.3333333333..........34444555555555554444444443333333..4 PP

         YABBY 104 nedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                   + +++vp +   +++PP +rqr Psayn+f+keei+rik+  P+i+h++afs+aaknWah+P+i  +
  OB07G25220.1  96 DAEDDVPAAAAaANKPPGRRQRTPSAYNCFVKEEIKRIKCMEPNITHKQAFSTAAKNWAHLPRIQQK 162
                   4455555544439**************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.2E-4712161IPR006780YABBY protein
SuperFamilySSF470956.55E-7108158IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.0E-5110160IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSSACDPCSG LRERLGYVQC NLCDTVLLVS VPCSRVLRVV AVQCGHCSGI LSAVSLPPPP  60
LPPPASVEIR PQELDVEPPP REYSDESSGD DREGGDAEDD VPAAAAAANK PPGRRQRTPS  120
AYNCFVKEEI KRIKCMEPNI THKQAFSTAA KNWAHLPRIQ QKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G25220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740191e-153AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657866.11e-117PREDICTED: protein YABBY 7-like
SwissprotA2PZN88e-79YAB7_ORYSJ; Protein YABBY 7
TrEMBLJ3MM901e-116J3MM90_ORYBR; Uncharacterized protein
STRINGOB07G25220.11e-117(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-33YABBY family protein