PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G26110.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 410aa    MW: 44990.6 Da    PI: 5.7098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G26110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.61.7e-814540943374
          GRAS  43 ayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNqaIleavege........ervHiiDfdisqGlQWpaLlq 130
                     f ++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  f+h++aN aIle++ +         +r Hi+D++ + ++QWp+Ll+
  OB07G26110.1  45 DIFFQGLFARLTTSGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFGHVAANGAILESFLEVaaaassetQRFHILDLSNTFCTQWPTLLE 140
                   6799******************99888744.44444444446*********************8754434455567999****************** PP

          GRAS 131 aLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldes 217
                   aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gvpf+f++++++ +l++l+l++L++++     alaVn+v +l  ++  +
  OB07G26110.1 141 ALATRSaDETPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGVPFRFRAVHHSgDLAELDLDALDLREggaTTALAVNCVNSLRGVV--P 235
                   ******8889**********988889999999*************************8888**************888889************9..6 PP

          GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnse.............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                   ++ +  rd++   +++l P+vv+vve+ead+ +               Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c 
  OB07G26110.1 236 GKARR-RDAFAASLRKLDPRVVTVVEEEADLVACdpdaseeggdteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCP 330
                   66666.9*********************9984434678899999999*************************************.************ PP

          GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                    +e+ er+et++ W +r+++aGF+pvp+se++a+++++llr++  +g+++ e         + ++l Wk++pLv++SaWr
  OB07G26110.1 331 ASESMERRETAAAWARRMRSAGFSPVPFSEDVADDVRSLLRRYR-EGWSMREAgtedsaaGAGVFLAWKEQPLVWASAWR 409
                   *******************************************9.88888855555566455566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.4451383IPR005202Transcription factor GRAS
PfamPF035145.9E-7945409IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAHYTTISGR SWTMHMAQGR SWGEEKNGGE IDHAPFCKDS WGIMDIFFQG LFARLTTSGP  60
RTLRTLAAAS DRNTSFDSTR RTALRFQELS PWSSFGHVAA NGAILESFLE VAAAASSETQ  120
RFHILDLSNT FCTQWPTLLE ALATRSADET PHLSITTVVS AAPSAPTAAV QRVMREIGQR  180
MEKFARLMGV PFRFRAVHHS GDLAELDLDA LDLREGGATT ALAVNCVNSL RGVVPGKARR  240
RDAFAASLRK LDPRVVTVVE EEADLVACDP DASEEGGDTE AAFLKVFGEG LRFFSAYMDS  300
LEESFPKTSN ERLALERGAG RAIVDLVSCP ASESMERRET AAAWARRMRS AGFSPVPFSE  360
DVADDVRSLL RRYREGWSMR EAGTEDSAAG AGVFLAWKEQ PLVWASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-13334410118474Protein SHORT-ROOT
5b3h_B1e-1343441064420Protein SHORT-ROOT
5b3h_E1e-1343441064420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G26110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209590.0AK120959.1 Oryza sativa Japonica Group cDNA clone:J023039J21, full insert sequence.
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0054370.0AP005437.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1113_E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694703.10.0PREDICTED: protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLJ3MMH90.0J3MMH9_ORYBR; Uncharacterized protein
STRINGOB07G26110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-111GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]