PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G26230.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 171aa    MW: 18627.6 Da    PI: 9.9367
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G26230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004193115123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++C+  F+++  L  H r+H
  OB07G26230.1  93 HRCSICPLAFTSRQALGGHKRVH 115
                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-94771IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0994769IPR007087Zinc finger, C2H2
SuperFamilySSF576672.91E-847115No hitNo description
SMARTSM003550.0734769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-491117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-693116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.95193117IPR007087Zinc finger, C2H2
SMARTSM003550.0293115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEEYLATSLL MLAHGVRNKV NDTSGLGHVQ DMGSTPVAVE KPSQQEYKCS VCGKVYMCYQ  60
ALGGHMTRHR KLLAQVVTDH KLFSNGSEAT KMHRCSICPL AFTSRQALGG HKRVHYGGGV  120
AKDFVKEKNV VKTKSMGEPK AVLKDFDLNL PAVATTVGDK AKNSPPEAKR V
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G26230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658754.11e-125PREDICTED: zinc finger protein ZAT6-like
TrEMBLJ3MMJ11e-124J3MMJ1_ORYBR; Uncharacterized protein
STRINGOB07G26230.11e-125(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-24salt tolerance zinc finger