PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G26260.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 270aa    MW: 29715.9 Da    PI: 4.6554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G26260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS185.14.7e-571267123373
          GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvl 208
                   +Q p+L++ LasR+egpp lR+T+ + + s        ++ee+g +L +fA++ +++++f+v+       +++ +++l++++L  + gEal+Vn+++
  OB07G26260.1   1 MQIPTLIDMLASRAEGPPILRLTVADVAPSApppaLDMSYEELGAKLVNFARSRNMSMDFRVVptspadaLTSLVDQLRVQQLVSDGGEALVVNCHM 97 
                   7***********************9886666788778899***********************887666555566677777777777********** PP

          GRAS 209 qlhrlldesvsles.......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                    lh+++de++ + s        r+ +Lk +++l P++vvvv+++ad ++ + + r+  a+++ +  +d++++ lp+ se+r+++E+e +g++++nv+
  OB07G26260.1  98 LLHTVPDETAGSVSlsqppvsLRTMLLKSLRTLDPTLVVVVDEDADFTACDVVGRLRAAFNFLWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVL 193
                   ******9987766655577768999**************************************************************.********* PP

          GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   a+eg er+er+e  ++W +r++ aGF++++++e+aa ++k++l++++  g+ ++ e++ lvl+Wk++++v++SaW
  OB07G26260.1 194 AQEGVERVERQEDRARWGQRMRGAGFRAAAFGEEAAGEVKAMLNEHA-AGWGMKREDDDLVLTWKGHNVVFASAW 267
                   ***********************************************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.6E-541267IPR005202Transcription factor GRAS
PROSITE profilePS5098529.9221249IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQIPTLIDML ASRAEGPPIL RLTVADVAPS APPPALDMSY EELGAKLVNF ARSRNMSMDF  60
RVVPTSPADA LTSLVDQLRV QQLVSDGGEA LVVNCHMLLH TVPDETAGSV SLSQPPVSLR  120
TMLLKSLRTL DPTLVVVVDE DADFTACDVV GRLRAAFNFL WIPYDAVDTF LPKGSEQRRW  180
YEAEVGWKVE NVLAQEGVER VERQEDRARW GQRMRGAGFR AAAFGEEAAG EVKAMLNEHA  240
AGWGMKREDD DLVLTWKGHN VVFASAWAPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-232270212475Protein SHORT-ROOT
5b3h_B3e-232270158421Protein SHORT-ROOT
5b3h_E3e-232270158421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G26260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037500.0AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05.
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695004.10.0PREDICTED: putative scarecrow-like protein 16, partial
SwissprotQ9SN221e-101SCL32_ARATH; Scarecrow-like protein 32
TrEMBLJ3MMJ40.0J3MMJ4_ORYBR; Uncharacterized protein
STRINGOB07G26260.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.17e-94GRAS family protein