PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G28610.1

Common Name

LOC102722036

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 259aa MW: 28811.3 Da PI: 7.0186

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G28610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	33	73	1	45
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 +r ++erE+ Rd+ N+ f+eL ll ++ + + Ka +L OB07G28610.1 33 KRIHKSEREKIKRDKQNDLFSELGNLLEPD----RQNNGKACVLG 73 68899**********************996....34455555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-11	29	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-8	30	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-4	30	87	No hit	No description
PROSITE profile	PS50888	11.153	32	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MVPRDRVNAA AAADGRLVQS GIANKKCDRK APKRIHKSER EKIKRDKQND LFSELGNLLE 60 PDRQNNGKAC VLGETTRILK DLLSQVESLR KENSALKNES HYVALERNEL HDDNSMLRSE 120 ILDLQNEIRM RMEGSPVWSH VNTGPALRVS YPTNGMFPVQ HLPHLPVTTT VAFPQQQPVV 180 IEQHYATTPR ELQLFPESAT SEEDSEPSQE HGISDHVTRP QARYPAPGAT VPVNLFPVLP 240 GIQDQQCSSG TTGTSSKTA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G28610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658857.1	0.0	PREDICTED: transcription factor bHLH47-like
Refseq	XP_015695359.1	0.0	PREDICTED: transcription factor bHLH47-like
Swissprot	Q69V10	1e-165	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	J3MN79	0.0	J3MN79_ORYBR; Uncharacterized protein
STRING	OB07G28610.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	4e-33	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	102722036

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]