PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G29080.1
Common NameLOC102703138
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 376aa    MW: 40444.8 Da    PI: 6.0844
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G29080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.41e-3372171297
        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 
                   lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q ife+++ 
  OB07G29080.1  72 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIFEIARN 168
                   79************************99877778***************************************8889******************** PP

        DUF573  95 iWg 97 
                   iW+
  OB07G29080.1 169 IWR 171
                   **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-3073170IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLPAAAAAMS FPDADVDDDS DDGDFTDAPL IDPTFPNPTS SSAAAAPVPP AAGGGGGGVG  60
SSSGGGGERR PLFQRLWTEE DEIVILRGFA EFTAARGTAF ASHQYDTDPF YEDMRGRLQL  120
GFSKSQLVEK LRRLKRKYRN CVSRLRGSGS AFSFRSPHEQ AIFEIARNIW RPANKHGREG  180
DSDDEDAAAA AAVTPAAIPV NNTSPNGEVK SPTSGRQRRR RRVADFAAAA AAAPATVPAT  240
TNMVQPLHPV QVPVSVPVKM DDMLPALSQT TMPITVTMEG SEPLRLPVMP PQPAILDAEK  300
SCLTPLFKEM VRAVINIGSN PFGAQLPEPP HGLPMEGEKW RKQRILELEV YLKRIELLKD  360
QVKATLEELK SSAPGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G29080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037490.0AP003749.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1136_D11.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694835.10.0PREDICTED: uncharacterized protein LOC102703138
TrEMBLJ3MNC60.0J3MNC6_ORYBR; Uncharacterized protein
STRINGOB07G29080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-43DNA-binding storekeeper protein-related transcriptional regulator