PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G31850.1
Common NameLOC102713835
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 953aa    MW: 104434 Da    PI: 6.9278
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G31850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.56e-19364463198
                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++lv
  OB07G31850.1 364 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKLV 458
                   99**************************555567778***************9989999999***9.********************887.777778 PP

                   EEEE- CS
            B3  94 vkvfr 98 
                   +++++
  OB07G31850.1 459 MGFRK 463
                   77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-31356473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-21361464IPR015300DNA-binding pseudobarrel domain
CDDcd100174.33E-24362463No hitNo description
SMARTSM010194.0E-22364464IPR003340B3 DNA binding domain
PfamPF023624.6E-16364463IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547364465IPR003340B3 DNA binding domain
PROSITE profilePS5105014.916624674IPR011124Zinc finger, CW-type
PfamPF074965.7E-12629671IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    Send to blast
MAGMAAAALV AKRCMNAACG APAPSPAGGE WRKGWPLRSG GYAVLCDKCG LAYEQLVFCD  60
IFHQKESGWR ECSFCGKRLH CGCIASKKSF DLLDSGGVQC VNCIKNSAVQ SVSSPVVPKI  120
FSSQNNPRLF GKSDELLSGR PLETPSLMVD ARNDDLTIIA KTNHPFMVKN IEAGQCSNIL  180
RQQELENGSR QVKWELPTLN ISDMRRMPFL TRSQSALESS QCARRDENKD PTAESTTSES  240
LSEACLNMSL GIASNGNKLE ATSTVERPTL SPTTGFAEGR ELTTALSPFQ HAQRARHFLT  300
RPPRVGEGAV FDPTKDMLPH LRVARPPAEG RGRNQLLPRY WPRITDQELQ QISGDSNSTI  360
VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQPEGRP LTIQDAKGKE WHFQFRFWPN  420
NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR IEPGGKLVMG FRKATNTVSL PDSQISAIAN  480
GSILGDSLFS NTNENLAIVS GYSGFLQSIK GAADLHTSSL YDHHVNSADG DVSWLKADKF  540
GSRPDEGSLQ FLKRGRNIGS KSRRLSMDAE EAWELKLYWD EVQELLRPAP SAKPTVVMIE  600
DYEIEEYDEP PVFAKRSIFT IRSTGEQDQW IQCDDCSKWR RLPLNVIVAS KWTCADNTID  660
PKSCSCSAPE ELTPKELHIV LQQYEDMRRR KNSFGFKQSM PEMDAASLDA LATAAVFGEV  720
GNQGVPSVAT TTKHPRHRPG CTCIVCIQPP SGKGPKHNPA CTCNVCMTVR RRFKTLMMRK  780
KQRQSEREEA EASKKIAWMS RDEPEGSSLS RSPQTMDTTR DGDVTMADKV DINKGHIDLN  840
FHPTTIRDEE QHGGPQPRMS MVSLLEVANR PLENYMKQNG LTSLAGEQGS SSTCTGAAAT  900
APQPAPVESE ERTSNTEGGR VPSAEQPESM AVDEAGDNPP DKAAAAASDA AAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-673424662126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1769780RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G31850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013560.0AK101356.1 Oryza sativa Japonica Group cDNA clone:J033035A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658132.10.0PREDICTED: B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLJ3MP530.0J3MP53_ORYBR; Uncharacterized protein
STRINGOB07G31850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-173HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]