PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G31890.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 581aa    MW: 64694.1 Da    PI: 11.0895
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G31890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.53.6e-25126186259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dg +WrKYGqK++++s++prsYYrCt++   gC+++k+v+ s+++p+ ++i Y geH+++
  OB07G31890.1 126 EDGKQWRKYGQKHIQDSPNPRSYYRCTHKpdqGCMATKQVQASETNPSEFVISYYGEHTCR 186
                   89**************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26111188IPR003657WRKY domain
SuperFamilySSF1182907.59E-25118188IPR003657WRKY domain
PROSITE profilePS5081123.135120188IPR003657WRKY domain
SMARTSM007744.0E-35125187IPR003657WRKY domain
PfamPF031063.0E-24126186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MASPGGDGDS GSSPASVPYE VLGDLLEVRK SAVKLQSMLA ETPSSSCAAA STRQLSQLLD  60
GVVSRLQAST LSVMSPAGGG AGRRGSGGRK KKSPAAEYSG PHRRSSSGRR RSKSPFVKMV  120
TAKELEDGKQ WRKYGQKHIQ DSPNPRSYYR CTHKPDQGCM ATKQVQASET NPSEFVISYY  180
GEHTCRDPST IPFVFEAEAP TADYANLISF GSRAAAVAST SRDVPLQSHR HFLADAAAAA  240
AAEPTXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XPVISWQPPP PPPPSIQRRH VASPTAAPRC RRRSAPARRS CSSAAACRSP  480
PWLDPRGRRR RRRSWGQRLR ATGRRGSSAV TWRAASRPLP AASGSIWLAL SAPLGIFLGM  540
TTTCLASIPN KGLHGYINSC HANYRYKYPR NKSAICMILL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21120186369OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1485492RGRRRRRR
2487492RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G31890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MP571e-135J3MP57_ORYBR; Uncharacterized protein
STRINGOB07G31890.11e-135(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-22WRKY DNA-binding protein 46