PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G32210.1

Common Name

LOC102718472

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 353aa MW: 39103.4 Da PI: 6.989

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G32210.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.5e-34	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLHerFv+av+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl OB07G32210.1 51 KPRLKWTSELHERFVDAVTQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 105 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.485	48	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-32	49	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	50	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-24	51	106	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-9	53	104	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-25	153	199	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MTGTEQMYHQ QQIQSENQHL SSRPVLPPEK QFLLQGGTDS SSGLVLSTDA KPRLKWTSEL 60 HERFVDAVTQ LGGPDKATPK TIMRLMGIPG LTLYHLKSHL QKYRLSKNLQ SQANASRAQG 120 VLGCSAMETD KPCEGNGSPA SHLDLEMQTS SSVHISEALQ MQIEVQRRLH EQLEVQRHLQ 180 LRIEAQGKYL QSVLEKAQEA LGTIGVAEAA ANTSPSKRLQ NEHSHRHQQQ QQQQVGDGSV 240 DSCLTACDCD GSHHRGGGGR GGDQDVLSIG LPPFEPARSG RDTEHYLLFP DEPSTRRPCS 300 EERRREIRRD GFNSGSITLQ ASELDLNIND GSSSGRYHSH RRERIDLNGS GWN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MTGTEQMYHQ QQIQSENQHL SSRPVLPPEK QFLLQGGTDS SSGLVLSTDA KPRLKWTSEL  60
HERFVDAVTQ LGGPDKATPK TIMRLMGIPG LTLYHLKSHL QKYRLSKNLQ SQANASRAQG  120
VLGCSAMETD KPCEGNGSPA SHLDLEMQTS SSVHISEALQ MQIEVQRRLH EQLEVQRHLQ  180
LRIEAQGKYL QSVLEKAQEA LGTIGVAEAA ANTSPSKRLQ NEHSHRHQQQ QQQQVGDGSV  240
DSCLTACDCD GSHHRGGGGR GGDQDVLSIG LPPFEPARSG RDTEHYLLFP DEPSTRRPCS  300
EERRREIRRD GFNSGSITLQ ASELDLNIND GSSSGRYHSH RRERIDLNGS GWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-18	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-18	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-18	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-18	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G32210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067645	0.0	AK067645.1 Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658148.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X2
Swissprot	Q9FK47	5e-78	PHLA_ARATH; Myb-related protein 1
TrEMBL	J3MP89	0.0	J3MP89_ORYBR; Uncharacterized protein
STRING	OB07G32210.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	7e-78	myb-related protein 1

Link Out ? help Back to Top
Entrez Gene	102718472

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]