PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G11050.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 118aa    MW: 13625.2 Da    PI: 5.9592
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G11050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-067193123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  + C+ Cg sF  + +Lk+H+++H
  OB08G11050.1 71 HNCQECGASFQKPAHLKQHMQSH 93
                  67*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355222547IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.57E-66997No hitNo description
Gene3DG3DSA:3.30.160.604.4E-77196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00397193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.5087198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MCSGDETDGD TKIEDATHYR DIRRYKCEFC TVVRSKKCLI QAHMVLHHKE ELDKSEIYNS  60
NGEKIVHDGD HNCQECGASF QKPAHLKQHM QSHSDEDLDS LQCEALDPKE LQNAMRHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G11050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004733e-90AK100473.1 Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659053.11e-62PREDICTED: transcription factor IIIA-like
TrEMBLJ3MPS63e-82J3MPS6_ORYBR; Uncharacterized protein
STRINGOB08G11050.15e-83(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17974810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-17transcription factor IIIA