PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G13710.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 194aa    MW: 20651.8 Da    PI: 4.1432
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G13710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-1162121162
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE- CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt 62 
                   f+kv tpsdv+k++rlv+pk++ae++    + +++l +ed+ g  W++++    +s +++l 
  OB08G13710.1  62 FDKVVTPSDVGKLNRLVVPKQHAERFFPAAAAGTQLCFEDRAGTPWRFRY--GPGSATMFLD 121
                   89************************666678889***************..8777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-1857122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-1259123IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-1060111No hitNo description
PfamPF023622.1E-962121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MYMDLTLGGA VLQVEATEEE EEEEEQALGQ EATPAALVLG RREVVVGGGG GGCGAVEREH  60
MFDKVVTPSD VGKLNRLVVP KQHAERFFPA AAAGTQLCFE DRAGTPWRFR YGPGSATMFL  120
DTVVPVVAGH RVDVGPTGQR SFRLFGVNVE CGGNDAAAAA AAAEEADDAA GDDDDDDGDR  180
RGEEMELVMW TNHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-2357117367B3 domain-containing transcription factor NGA1
5os9_B6e-2357117367B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G13710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046982e-77AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149642e-77AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-77CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695501.11e-94PREDICTED: putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD52e-42Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLJ3MQJ21e-137J3MQJ2_ORYBR; Uncharacterized protein
STRINGOB08G13710.11e-137(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-21B3 family protein