PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G13850.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 270aa    MW: 28952.3 Da    PI: 7.9261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G13850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.52.9e-10328127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                  +kt+lC+ f++ GtC+y  +C+FaHg+
  OB08G13850.1  3 FKTKLCCKFRA-GTCPYVTNCNFAHGM 28
                  69*********.*************95 PP
2zf-CCCH18.53.6e-0676101126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   yk + C+ f+    C+yGd C+F H+
  OB08G13850.1  76 YKGRHCKKFYTDEGCPYGDACTFLHD 101
                   77888********************7 PP
3zf-CCCH43.93.9e-14149174126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +kt++C+ +  tG+C++G++C+FaHg
  OB08G13850.1 149 WKTRICNKWEMTGYCPFGSKCHFAHG 174
                   8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.028229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-14235IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.38E-7233IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-975103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-775103IPR000571Zinc finger, CCCH-type
SMARTSM003560.4375102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.62975103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-17144178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-10145179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422148176IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9148175IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-11149174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MFFKTKLCCK FRAGTCPYVT NCNFAHGMEE LRKPPPNWQE IVAAHEEATE AREEHQIPIM  60
TSSGPAPGDA GSGRAYKGRH CKKFYTDEGC PYGDACTFLH DEQSKARESV AISLSPTVGA  120
AGGYNSASAA TAAASSAAAN GPAQKPSNWK TRICNKWEMT GYCPFGSKCH FAHGAAELHK  180
YGGGLVDLDS RDAASTPDSK QAAASAKAPT DTAIASTAAP PHADVYHLGV QAQRSTIVNQ  240
RSGQVQRPIQ KWKGPDKISR IYGDWIDETE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G13850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983771e-119FP098377.1 Phyllostachys edulis cDNA clone: bphyem211c22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659856.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-163C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLJ3MQK60.0J3MQK6_ORYBR; Uncharacterized protein
STRINGOB08G13850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-86C3H family protein