PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G14600.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 67aa    MW: 7880.85 Da    PI: 11.1703
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G14600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-113567238
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38
                   y GVr+++ +gr++AeIr p++   + r++lg+f+t
  OB08G14600.1 35 EYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDT 67
                  588******.**********865...5*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-103467IPR016177DNA-binding domain
SMARTSM003800.0023567IPR001471AP2/ERF domain
PROSITE profilePS5103214.4863567IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-153567IPR001471AP2/ERF domain
PfamPF008472.5E-53667IPR001471AP2/ERF domain
PRINTSPR003675.3E-63647IPR001471AP2/ERF domain
PRINTSPR003675.3E-65867IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MEDAAEQRTE QQAGAAAVTP QQMMIRRRRA RASSEYLGVR RRPWGRYAAE IRNPYTKERH  60
WLGTFDT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G14600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417622e-59AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence.
GenBankAP0051642e-59AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03.
GenBankAP0149642e-59AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-59CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659882.11e-42PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ3E7031e-17ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLJ3MQT15e-41J3MQT1_ORYBR; Uncharacterized protein
STRINGOB08G14600.19e-42(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.14e-20ERF family protein