PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G14900.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 218aa    MW: 22372.2 Da    PI: 9.9482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G14900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.6e-051001351454
                   HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +++ +++  L++l+ +      +K + a++L +++eYIk L
  OB08G14900.1 100 EKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 135
                   67779999999999998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.60186135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-598139No hitNo description
SuperFamilySSF474591.7E-1198155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-998157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEVPPAAGRE TTNSTAPYWN PSSGFTVAAD GAAALGAAGG GAPASLSAKS ALEGVGDSSS  60
IITKKAKVDS TPLKKSRTGT PSALPTTFKA CIFPPLVRKE KLGDRITALQ QLVSPFGKTD  120
TASVLHETIE YIKFLHDQVG ALSAPYLKNR QQVPHLKSSG DNNNSKQGGG GAGEAAAAAA  180
SKRDLTGRGL CLVPISSTFA VASETPVDFW TPFGAAFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G14900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612839e-52BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695877.11e-115PREDICTED: transcription factor bHLH112-like
TrEMBLJ3MQW11e-156J3MQW1_ORYBR; Uncharacterized protein
STRINGOB08G14900.11e-156(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-40bHLH family protein