PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G15090.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 215aa MW: 24287.8 Da PI: 6.2818

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G15090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.4	3.8e-21	108	164	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ OB08G15090.1 108 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 164 678899************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-23	89	149	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.85E-21	94	165	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	105	165	IPR001356	Homeobox domain
SMART	SM00389	2.3E-20	106	169	IPR001356	Homeobox domain
Pfam	PF00046	9.3E-19	108	163	IPR001356	Homeobox domain
CDD	cd00086	6.49E-20	108	166	No hit	No description
PRINTS	PR00031	4.3E-5	136	145	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	140	163	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.3E-5	145	161	IPR000047	Helix-turn-helix motif
Gene3D	G3DSA:1.10.10.60	2.4E-4	150	192	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MTPARRMPPV IGRNGVAYGS PSAQLPLTQT DLLDSHHLQQ ALQQQYFDQI PVTTTTAPAD 60 SGDNMLHGRA DAGGLGDEFE SKSCSENVDG AGDGLSGDDQ DPNQRPRKKR YHRHTQHQIQ 120 EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKNQHERHE NAQLRAENDK 180 LRAENMRYKE ALSSASCPNC GGPDALGEMS FDEHH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269\|PubMed:11846882}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G15090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB077993	0.0	AB077993.1 Oryza sativa mRNA for Roc1, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659894.1	1e-156	PREDICTED: homeobox-leucine zipper protein ROC1
Swissprot	Q6ZAR0	1e-141	ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBL	J3MQY0	1e-160	J3MQY0_ORYBR; Uncharacterized protein
STRING	OB08G15090.1	1e-161	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP26659	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	7e-71	homeodomain GLABROUS 2

Publications ? help Back to Top
Lee JH, et al. Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. Plant Cell, 2008. 20(1): p. 152-67 [PMID:18223036] Yi J, et al. OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa. J. Exp. Bot., 2016. 67(8): p. 2425-37 [PMID:26912801] Dou M,Cheng S,Zhao B,Xuan Y,Shao M The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice. Int J Mol Sci, 2016. 17(3): p. 233 [PMID:26927068] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]